- satisfies(Graph) - Method in class edu.claflin.finder.logic.cond.BipartiteCondition
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- satisfies(Graph, Set<Node>, Set<Node>, Node) - Method in class edu.claflin.finder.logic.cond.BipartiteCondition
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Private method for stepping through the adjacency lists and determining
if the graph is bipartite.
- satisfies(Graph) - Method in class edu.claflin.finder.logic.cond.CliqueCondition
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Used to test if the supplied graph is within the bounds of the
condition's implementation.
- satisfies(Graph) - Method in class edu.claflin.finder.logic.cond.DirectedCliqueCondition
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Used to test if the supplied graph is within the bounds of the
condition's implementation.
- satisfies(Graph) - Method in class edu.claflin.finder.logic.Condition
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Used to test if the supplied graph is within the bounds of the
condition's implementation.
- searchNode(Graph, Node) - Method in class edu.claflin.finder.algo.BreadthFirstTraversalSearch
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Helper method to search for the SubGraphs.
- searchNode(Graph, Graph, Node, List<Node>) - Method in class edu.claflin.finder.algo.DepthFirstTraversalSearch
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Helper method to search for the SubGraphs.
- setData(D) - Method in class edu.claflin.finder.logic.Edge
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Access method for the Edge's data (such as weight).
- setFileLogs(boolean[]) - Method in class edu.claflin.finder.log.LogUtil
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Sets the FileLogs HashMap for selective logging to the file.
- setForceOnAdd(boolean) - Method in class edu.claflin.finder.logic.ConditionedGraph
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Accessor method for configuring if conditions are forced on add of
network components.
- setGroup(String) - Method in class edu.claflin.finder.logic.cygrouper.CygrouperNode
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- setGroups(ArrayList<Map<String, CygrouperNode>>) - Method in interface edu.claflin.finder.logic.cygrouper.CommunicationListener
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- setGroups(ArrayList<Map<String, CygrouperNode>>) - Method in class edu.claflin.finder.logic.cygrouper.Communicator
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- setOutput(File) - Static method in class edu.claflin.finder.Global
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Sets the output directory for storing results.
- setProgress(double) - Method in class edu.claflin.finder.algo.Algorithm
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- setTerminalLogs(boolean[]) - Method in class edu.claflin.finder.log.LogUtil
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Sets the TerminalLogs HashMap for selective terminal logging.
- setUndirected(boolean) - Method in class edu.claflin.finder.logic.Edge
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Access method for the Edge's undirectedness parameter.
- setUniqueSubGraphs(ArrayList<Graph>) - Method in interface edu.claflin.finder.logic.cygrouper.CommunicationListener
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- setUniqueSubGraphs(ArrayList<Graph>) - Method in class edu.claflin.finder.logic.cygrouper.Communicator
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- SIFGraphIO - Class in edu.claflin.finder.io.graph
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A class for reading and writing graphs in the SIF format.
- SIFGraphIO(String) - Constructor for class edu.claflin.finder.io.graph.SIFGraphIO
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Constructs the SIFGraphIO object.
- SimpleGraphIO - Class in edu.claflin.finder.io.graph
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A class for reading and writing graphs.
- SimpleGraphIO() - Constructor for class edu.claflin.finder.io.graph.SimpleGraphIO
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Empty Constructor for instantiating the class.
- source - Variable in class edu.claflin.finder.logic.cygrouper.CygrouperEdge
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- source - Variable in class edu.claflin.finder.logic.Edge
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The node representing the source.
- superAddPartialGraph(List<Node>, List<Edge>) - Method in class edu.claflin.finder.logic.ConditionedGraph
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Private method for circumventing the condition restrictions.
- suppressLog - Variable in class edu.claflin.finder.logic.Graph
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Used to suppress logging.